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Table 1 Previously characterised Tat interaction partners.

From: In vitro nuclear interactome of the HIV-1 Tat protein

Symbol G.O. Process TurboSEQUEST Score Coverage % KD Accession (GI) MS/MS Peptide no. Ref
BRG1 Transcription 258.28 18.9 184529.4 21071056 32 (31 1 0 0 0) 5
INI1 Transcription 40.25 18.30 40666.5 3326993 4 (4 0 0 0 0) 22
BAF170 Transcription 70.26 8.20 132649.7 1549241 7 (7 0 0 0 0) 6
CTIP2 Transcription 70.22 12.8 88420.5 12597635 8 (8 0 0 0 0) 35
ILF2 Transcription 70.35 26.60 44669.4 1082855 11 (10 1 0 0 0) 27, 30
ILF3 Transcription 60.22 16.6 61936.8 9714272 6 (6 0 0 0 0) 27,30
YBX1 Transcription 30.25 16.7 35902.7 27807361 6 (6 0 0 0 0) 21
POLR2A Transcription 130.28 12 217042.6 7434727 14 (14 0 0 0 0) 24
TAF15 Transcription 20.22 5.4 61520.8 4507353 2 (2 0 0 0 0) 28
ERCC2 Transcription 30.16 5.6 83419.5 296645 3 (3 0 0 0 0) 26, 39
POLR2B Transcription 40.22 5.1 133810.7 4505941 4 (4 0 0 0 0) 24
BTAF1 Transcription 120.24 11.1 206754.5 27477070 12 (12 0 0 0 0) 28
c1qbp RNA processing 30.29 23.00 30888.4 338043 5 (5 0 0 0 0) 23
NPM1 RNA processing 126.31 38.8 32582.9 33694244 43 (42 0 1 0 0) 29
EEF1D Translation 50.27 11.6 71378.2 14043783 5 (5 0 0 0 0) 37
CDC2 Cell cycle 158.31 58.1 34187 30584091 22 (21 1 0 0 0) 33
PPP1CC Cell cycle 40.29 18.60 36959.8 4506007 4 (4 0 0 0 0) 20
RFC1 DNA replication 50.24 6.2 128174 2136100 5 (5 0 0 0 0) 24
LMNB nucleus organization 126.22 24.2 66367.7 5031877 13 (12 0 1 0 0) 31, 32
KPNB1 nucleus organization 70.25 11.5 97108.2 19923142 7 (7 0 0 0 0) 36
  1. List of the proteins identified by LC-MS/MS corresponding to known Tat interaction partners. Amino acid coverage (Coverage %), number of MS/MS peptides used for the identification (MS/MS peptide no), TurboSEQUEST score, GenInfo Identifier (GI) for protein and gene ontology (GO) analysis (cellular process) for each identification are indicated.