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Table 2 Oligo-nucleotide primers for the viral amplification

From: Exceptional molecular and coreceptor-requirement properties of molecular clones isolated from an Human Immunodeficiency Virus Type-1 subtype C infection

Amplification

Primers

HXB2 Coordinate

Sequence (5'-3')

N-term 3.0 kb fragment

First round

N558F

0001

TGGAAGGGTTAATTTACTCTAAGGAAAGGCAAGAGATCCTTG

 

N453R

4820

CTATTATGTCTACTATTCTTTCCCCTGCAC

Second round

N533F

0001

GGGGGGCAGTGCGGCCGCTGGAAGGGTTAATTTACTCYMAGAAAAGRCAAG

 

N502R

2878

TGAAAAATACGCGTCMCCCACATCCAGTACTGT

C-term 6.5 kb fragment

First round

N501F

1851

CCAYAAAGCACGCGTKTTGGCTGARGCAATGAG

 

N476R

9719

TGCTAGAGATTTTCCACACTGACTAAAAGGGTCTGAGGTCTCTAGTT

Second round

N503F

2841

ACTGGATGTGGGKGACGCGTATTTTTCAGTTCC

 

N600R

9719

GCTTCGCATCCTGCAGGTGCTAGAGATTTTCCACACTGACTAAAAGGGTC

  1. Sequences of the reverse oligo-nucleotides have been presented as inverse complement. Restriction enzyme sites have been underlined.