Figure 8

RE expression in pure cell populations from in vivo and in vitro human infections. Hierarchally-clustered heatmaps of RE-reporting probes significantly regulated (p < 0.01 by ANOVA comparing conditions) in (A) ex vivo HIV-1 infection (age and gender additionally eliminated from the ANOVA) and (B) in vitro HIV-1 infection. Data are from E-GEOD-42058 and −22589, Human Genome U133 Plus arrays, respectively. (C) Heatmap of significantly regulated RE-reporting probes in Leishmania major infected DCs (p < 0.01 by ANOVA comparing time points) ordered by time point with hierarchal clustering of probes. Data are from E-GEOD-42088, a Human Genome U133 Plus array. Where present, probes corresponding to HML-2 elements are highlighted.