Table 3 Percent nucleotide identity of concatenated Gag-Pol-Env-Nef sequences along the coding region for SIVrtg_Kib and other major SIV lineages
Nucleotide identity [%] | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SIV strains | rtg_Kib | mus-1 | mus-2 | deb | tal | cpz | syk | mnd-2 | agm | rcm | smm | lst | col |
rtg_Kib | 100 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
mus-1 | 63.2 | 100 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
mus-2 | 62.6 | 75.1 | 100 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
deb | 55.1 | 55.3 | 54.9 | 100 | Â | Â | Â | Â | Â | Â | Â | Â | Â |
tal | 57.5 | 56.6 | 56.1 | 57.8 | 100 | Â | Â | Â | Â | Â | Â | Â | Â |
cpz | 56.1 | 56.4 | 56.5 | 52.5 | 52.3 | 100 | Â | Â | Â | Â | Â | Â | Â |
syk | 54.4 | 53.1 | 54.3 | 59.8 | 56.1 | 51.1 | 100 | Â | Â | Â | Â | Â | Â |
mnd-2 | 52.3 | 52.0 | 52.3 | 54.0 | 54.6 | 54.3 | 53.0 | 100 | Â | Â | Â | Â | Â |
agm | 53.6 | 51.9 | 52.5 | 53.8 | 55.6 | 52.5 | 54.5 | 57.6 | 100 | Â | Â | Â | Â |
rcm | 52.7 | 51.7 | 51.7 | 53.8 | 54.8 | 54.5 | 54.0 | 63.9 | 59.0 | 100 | Â | Â | Â |
smm | 52.8 | 52.7 | 53.1 | 55.1 | 55.5 | 52.7 | 54.0 | 59.2 | 58.4 | 61.4 | 100 | Â | Â |
lst | 50.8 | 50.0 | 50.1 | 52.1 | 52.4 | 50.3 | 51.9 | 57.0 | 55.1 | 55.5 | 55.1 | 100 | Â |
col | 47.8 | 48.1 | 47.4 | 48.5 | 47.6 | 47.9 | 47.0 | 49.4 | 49.3 | 48.9 | 48.8 | 48.8 | 100 |