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Table 1 The sequences of TAR and R oligonucleotides used in this study

From: Similarities and differences in the nucleic acid chaperone activity of HIV-2 and HIV-1 nucleocapsid proteins in vitro

Name

Sequence 5′ ‒ 3′‒

Length

TAR1(+) DNA

GGTCTCTCTTGTTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAAGGAACCC

56

TAR1(−) DNA

GGGTTCCTTGCTAGCCAGAGAGCTCCCGGGCTCGACCTGGTCTAACAAGAGAGACC

56

TAR1(−)mut DNA

GGGTTCCTTGCTAGCCAGAGAGCTCCCGGGCTCGACCTGGTCTTTGAACTCAGAGG

56

TAR1 RNA

GGUCUCUCUUGUUAGACCAGGUCGAGCCCGGGAGCUCUCUGGCUAGCAAGGAACCC

56

R1(+) DNA

GGTCTCTCTTGTTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAAGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCCTCCC

96

R1(−) DNA

GGGAGGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCTTGCTAGCCAGAGAGCTCCCGGGCTCGACCTGGTCTAACAAGAGAGACC

96

R1(−)mut DNA

GGGAGGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCTTGCTAGCCAGAGAGCTCCCGGGCTCGACCTGGTCTAACATCAGTCTCTA

97

TAR2 RNA

GGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGACGGCC

123

TAR2(−) DNA

GCCGTCTGCCCAGCACCGGCCAAGTGCTGGTGAGAGTCTAGCAGGGAACACCCAGGCTCTACCTGCTAGTGCTGGAGAGAACCTCCCAGGGCTCAATCTGCCAGCCTCTCCGCAGAGCGAC

121