HIV sequence | Total number of sequences | Maximum length of sequence | Maximum HD | Mean HD (%) | Poisson estimated days since MRCA (95% CI) | Lambda | Standard deviation | Goodness of fit p-value | HD fit to poisson | Star phylogeny |
---|---|---|---|---|---|---|---|---|---|---|
Env-only | 22 | 2571 | 7 | 2.6 | 43 (32, 54) | 2.628 | 0.334 | 0.987 | Yes | Yes |
3’-half | 22 | 4682 | 10 | 4.3 | 38 (31, 46) | 4.264 | 0.426 | 0.960 | Yes | Yes |
5’-half | 21 | 5349 | 9 | 4.7 | 37 (30, 44) | 4.657 | 0.447 | 0.225 | Yes | Yes |