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Table 3 The pairwise AA diversity of gag domains in 8 HIV-1 subtypes and CRFs (%)

From: Functional conservation of HIV-1 Gag: implications for rational drug design

  Matrix Capsid p2 NC p1 p6 Gag
B 12.36 4.56 20.65 10.31 4.77 15.74 8.84
A1 10.69 5.46 13.97 4.75 5.60 17.17 8.18
C 14.77 5.77 23.79 9.79 4.80 15.83 9.96
D 12.74 4.87 25.62 9.43 8.89 10.17 8.68
F1 12.71 5.37 29.24 9.00 6.71 15.32 9.32
G 17.51 6.15 16.06 10.53 8.42 13.90 10.71
01_AE 11.36 3.44 24.36 4.95 7.74 14.07 7.46
02_AG 13.67 4.91 18.50 3.31 5.39 14.39 8.35
Mean 13.17±2.01 5.04±0.79 21.49±4.83 7.92±2.77 6.39±1.60 14.70±1.99 9.02±1.09