| | | |
ESC
|
ESC
|
ESC
|
iPSC
|
iPSC
|
iPSC
|
iPSC
|
iPSC
|
iPSC
|
ECC
|
ECC
|
ECC
|
|---|
|
Alias
|
Type
|
ORF
|
BG01
|
H1
|
H9
|
MRC
|
MRC
|
MSC
|
MSC
|
hFib2
|
hFib2
|
GH
|
NCCIT
|
2102
|
|---|
| | | | | | |
iPS7
|
iPS20
|
iPS1
|
iPS3
|
iPS4
|
iPS5
| | |
Ep
|
|---|
|
K101(22q11.21)
|
1
|
g/n
|
64
|
60
|
57
|
69
|
61
|
56
|
88
|
62
|
39
|
75
|
16
|
29
|
|
ERVK-24
| | | | | | | | | | | | | | |
|
K10(5q33.3)
|
1
|
g/prt/n
|
-
|
26
|
7,3
|
8
|
23
|
5,5
|
6
|
-
|
22
|
8,5
|
21
|
-
|
|
ERVK-10
| | | | | | | | | | | | | | |
|
K109(6q14.1)
|
2
|
g/prt/e/r
|
-
|
7
|
7,3
|
-
|
8
|
-
|
-
|
-
|
-
|
-
|
-
|
42
|
|
ERVK-9
| | | | | | | | | | | | | | |
|
K106(3q13.2)
|
1
|
g/n
|
-
|
-
|
-
|
-
|
-
|
5,5
|
-
|
8
|
11
|
-
|
5
|
-
|
|
ERVK-3
| | | | | | | | | | | | | | |
|
K37(11q23.3)
|
1
|
g/prt/n
|
36
|
-
|
14
|
15
|
8
|
22
|
-
|
15
|
16
|
-
|
-
|
-
|
|
ERVK-20
| | | | | | | | | | | | | | |
|
HKc10-B(10q24.2)
|
2
|
g/r
|
-
|
7
|
7
|
-
|
-
|
11
|
-
|
-
|
6
|
-
|
-
|
-
|
|
ERVK-17
| | | | | | | | | | | | | | |
|
KI(3q21.2)
|
2
|
r
|
-
|
-
|
-
|
8
|
-
|
-
|
6
|
-
|
6
|
-
|
-
|
-
|
|
ERVK-4
| | | | | | | | | | | | | | |
|
K115(8p23.1)
|
2
|
pol/e/r
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
15
|
-
|
-
|
-
|
-
|
|
ERVK-8
| | | | | | | | | | | | | | |
|
K41(12q14.1)
|
2
|
g/prt/e/r
|
-
|
-
|
7,3
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
|
ERVK-21
| | | | | | | | | | | | | | |
|
K108(7p22.1)
|
2
|
g/prt/e/r
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
16,5
|
11
|
29
|
|
ERVK-6
| | | | | | | | | | | | | | |
|
K102(1q22)
|
1
|
n
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
47
|
-
|
|
ERVK-7
| | | | | | | | | | | | | | |
- Proviruses are designated by name and chromosomal locus, by type and putative open reading frames (ORF). For each cell line the relative cloning frequencies of the respective HERV-K(HML-2) loci are given as % (number of sequences assigned to the locus divided by the total number of sequences generated from the cDNA sample). 14 clones were generated and analyzed for BG01, 2102Ep, H9; 15 for H1; 13 for MRCiPS7, MRCiPS20, hFib2iPS4; 17 for MSCiPS3; 18 for hFib2iPS5; 19 for MSCiPS1 and NCCIT, 24 for GH. Open reading frames for Gag (g), Protease (prt) Envelope (e), Rec (r) NP9 (n).
