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Table 1 Studies of the viral population of HIV-1 infected infants

From: The role of neutralizing antibodies in prevention of HIV-1 infection: what can we learn from the mother-to-child transmission context?

Infant samples

Infection route

Homo-/heterogeneous population ratio

References

Nature

Collection time*

Amplified envregion

PBMCs

2 to 4 months

V3 and V4-V5

Unspecified

3/0

[61]

PBMCs

Unspecified

V3 and V4-V5

Unspecified

4/0

[68]

PBMCs and serum

0 to 4 months

V3

1 IU, 9 unknown

8 (1 IU)/2

[69]

Serum

At birth

V3

1 IU

1/0

[70]

PBMCs

0 to 12.5 months

V3

1 IU, 4 unknown

2/3 (1 IU)

[71]

PBMCs

2 days to 7 weeks

V1-V2-C2

Unspecified

1/2

[72]

PBMCs

1 week to 34 months

V3

Unspecified

7/0

[73]

PBMCs

5 days to 1.5 months

V3

Probably 1 PN, 3 IU

1 (PN)/3 (IU)

[74]

PBMCs and plasma

2 to 40 days

C2-V3

Unspecified

3/1

[75]

PBMCs

1 month

V3

Unspecified

13/4

[76]

Plasma

48 hours or 2 to 6 weeks

V3-V5

9 PN, 14 IU

17 (7 PN, 10 IU)/6 (2 PN, 4 IU)

[77]

PBMCs

0 or 2 to 6 months

C2-V4

3 PN or early PP, 1 IU

3 (2 PN, 1 IU)/1

[78]

PBMCs

0 or 6 weeks

V1-V4

7 PN or early PP, 6 IU

6 (2 IU, 4 PN)/7 (4 IU, 3 PN)

[79]

PBMCs

48 hours or 2 to 6 weeks

V3-V5

7 PN, 14 IU

15 (5 PN, 10 IU)/6 (2 PN, 4 IU)

[80]

PBMCs or plasma

6 weeks

V1-V5

8 PN or early PP, 1 IU, 3 BF

11/1 (PN)

[81]

PBMCs or cord blood

0 or 6 to 15 months

V1-V3

3 PP, 1 IU

4/0

[82]

PBMCs

4 to 18 months

V1-V5

Unspecified

0/3

[83]

Plasma

0 or 6 weeks

V1-V2

23 PN, 25 IU

20 (6 PN, 14 IU)/28 (17 PN, 11 IU)

[84]

Plasma

48 hours or 6 weeks

V1-V5

11 PN, 6 IU

14 (9 PN, 5 IU)/3 (2 PN, 1 IU)

[85]

PBMCs

2 to 4 months

V1-V5

6 PN or early PP

5/1

[86]

Plasma

30 to 66 days

V1-V5

5 PN

3/2

[87]

Plasma

0 or 6 weeks

V1-V5

9 PN or early PP, 10 IU

13 (5 PN, 8 IU)/6 (4 PN, 2 IU)

[88]

Plasma

3 or 6 months

complete env

2 PP

2/0

[89]

    

total: 156/235

 
  1. * Time of the first PCR or coculture positive collected sample after birth.
  2. PN: perinatally; IU: in utero; PP: postpartum through breastfeeding.