Table 2 HML-9 solo LTR tracks distribution
From: Comprehensive identification and characterization of the HERV-K (HML-9) group in the human genome
Number | Locus | Chromosome | Strand | Position start | Position end | Length (bp) | Percentage of LTR14C in length (%) | Match + mismatch/full length (%) | Range (%) | Qgap (bp)/match + mismatch + Qgap (bp) (%) | Insertion or deletion | Intergenic/intron/exon | Gene including the region |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 14q21.1 | chr14 | + | 38011040 | 38012012 | 973 | 101.36 | 6.91 | (0–10) | 35.61 | Deletion, insertion | Intron | TTC6 |
2 | Xq21.32 | chrX | − | 93273183 | 93274197 | 1015 | 100.85 | 6.88 | (0–10) | 2.47 | Insertion | Intergenic | NA |
3 | 2q31.1 | chr2 | + | 180236847 | 180237437 | 591 | 100.34 | 6.84 | (0–10) | 0.34 | NA | Intergenic | NA |
4 | 18p11.31 | chr18 | – | 4527618 | 4528209 | 592 | 100.17 | 6.83 | (0–10) | 0.00 | NA | Intergenic | NA |
5 | 2q11.2 | chr2 | + | 97964920 | 97965508 | 589 | 100.00 | 6.82 | (0–10) | 0.00 | NA | Intron | TMEM131 |
6 | 15q14 | chr15 | + | 39011033 | 39011621 | 589 | 100.00 | 6.82 | (0–10) | 0.00 | NA | Intron | LINC02694 |
7 | 2p12 | chr2 | – | 81304430 | 81305068 | 639 | 99.83 | 6.81 | (0–10) | 0.00 | NA | Intergenic | NA |
8 | 2q32.3 | chr2 | – | 194256159 | 194256746 | 588 | 99.83 | 6.81 | (0–10) | 0.00 | NA | Intergenic | NA |
9 | 3q26.1 | chr3 | – | 163283189 | 163283777 | 589 | 99.83 | 6.81 | (0–10) | 0.00 | NA | Intron | LINC01192 |
10 | 4q26 | chr4 | + | 116980222 | 116980809 | 588 | 99.83 | 6.81 | (0–10) | 0.34 | NA | Intergenic | NA |
11 | 4p15.31 | chr4 | + | 19556097 | 19556684 | 588 | 99.83 | 6.81 | (0–10) | 0.17 | NA | Intron | AC024230.1 |
12 | 7p21.2 | chr7 | + | 14509240 | 14509827 | 588 | 99.83 | 6.81 | (0–10) | 0.00 | NA | Intron | DGKB |
13 | 8q11.21 | chr8 | – | 51178592 | 51179179 | 588 | 99.83 | 6.81 | (0–10) | 0.00 | NA | Intergenic | NA |
14 | 11q12.3 | chr11 | – | 62185237 | 62185824 | 588 | 99.83 | 6.81 | (0–10) | 0.00 | NA | Intergenic | NA |
15 | 2q21.3 | chr2 | + | 135521883 | 135522470 | 588 | 99.66 | 6.80 | (0–10) | 0.17 | NA | Intron | ZRANB3 |
16 | 3p12.2 | chr3 | – | 81329902 | 81330488 | 587 | 99.66 | 6.80 | (0–10) | 0.17 | NA | Intergenic | NA |
17 | 3p12.1 | chr3 | – | 83618409 | 83618995 | 587 | 99.66 | 6.80 | (0–10) | 0.17 | NA | Intergenic | NA |
18 | 5q21.3 | chr5 | – | 105998962 | 105999549 | 588 | 99.66 | 6.80 | (0–10) | 0.34 | NA | Intergenic | NA |
19 | 10p12.31 | chr10 | – | 18856645 | 18857233 | 589 | 99.66 | 6.80 | (0–10) | 0.17 | NA | Intergenic | NA |
20 | Yq11.23 | chrY | – | 25974734 | 25975320 | 587 | 99.66 | 6.80 | (0–10) | 0.17 | NA | Intergenic | NA |
21 | 6q14.1 | chr6 | – | 82297755 | 82298498 | 744 | 99.49 | 6.78 | (0–10) | 0.34 | Insertion | Intergenic | NA |
22 | Xp22.2 | chrX | + | 11033746 | 11034330 | 585 | 99.32 | 6.77 | (0–10) | 0.51 | NA | Intron | AC073529.1 |
23 | 2p12 | chr2 | + | 77807602 | 77808185 | 584 | 99.15 | 6.76 | (0–10) | 0.68 | NA | Intron | AC012494.1 |
24 | 1q23.3 | chr1 | + | 162419359 | 162419942 | 584 | 98.98 | 6.75 | (0–10) | 0.17 | NA | Intergenic | NA |
25 | Xq27.2 | chrX | – | 142767872 | 142768454 | 583 | 98.98 | 6.75 | (0–10) | 0.00 | NA | Intergenic | NA |
26 | 2q31.1 | chr2 | + | 171365032 | 171365617 | 586 | 98.64 | 6.73 | (0–10) | 1.19 | NA | Intron | METTL8 |
27 | 5q13.3 | chr5 | + | 75859521 | 75860102 | 582 | 98.64 | 6.73 | (0–10) | 0.17 | NA | Intergenic | NA |
28 | Xq27.3 | chrX | – | 144791258 | 144791846 | 589 | 98.47 | 6.71 | (0–10) | 1.37 | NA | Intergenic | NA |
29 | 12q12 | chr12 | + | 38144469 | 38145052 | 584 | 98.30 | 6.70 | (0–10) | 1.03 | NA | Intergenic | NA |
30 | 15q21.3 | chr15 | – | 54594796 | 54595373 | 578 | 98.13 | 6.69 | (0–10) | 2.04 | NA | Intron | UNC13C |
31 | 21q11.2 | chr21 | – | 14080466 | 14081052 | 587 | 97.79 | 6.67 | (0–10) | 2.05 | NA | Intron | AP001347.1 |
32 | 4q28.2 | chr4 | + | 129080872 | 129081454 | 583 | 97.61 | 6.66 | (0–10) | 2.22 | NA | Intron | SCLT1 |
33 | 3q25.2 | chr3 | – | 154944330 | 154944911 | 582 | 97.44 | 6.64 | (0–10) | 2.56 | NA | Intergenic | NA |
34 | 11q24.2 | chr11 | + | 124270705 | 124271275 | 571 | 96.93 | 6.61 | (0–10) | 0.00 | NA | Intergenic | NA |
35 | 2q14.3 | chr2 | – | 125024208 | 125024792 | 585 | 96.76 | 6.60 | (0–10) | 3.07 | NA | Intergenic | NA |
36 | 6q27 | chr6 | + | 169084226 | 169084808 | 583 | 96.76 | 6.60 | (0–10) | 3.07 | NA | Intergenic | NA |
37 | 13q13.3 | chr13 | – | 38319721 | 38320300 | 580 | 96.76 | 6.60 | (0–10) | 3.24 | NA | Intron | LINC00571 |
38 | 7q35 | chr7 | + | 143472173 | 143472744 | 572 | 96.08 | 6.55 | (0–10) | 3.75 | NA | Intron | EPHA1-AS1 |
39 | 14q21.3 | chr14 | + | 48011215 | 48011780 | 566 | 95.91 | 6.54 | (0–10) | 0.53 | NA | Intergenic | NA |
40 | 3p21.31 | chr3 | + | 44534488 | 44535059 | 572 | 95.74 | 6.53 | (0–10) | 3.77 | NA | Intergenic | NA |
41 | 2q22.1 | chr2 | – | 138860917 | 138861512 | 596 | 95.06 | 6.48 | (0–10) | 3.79 | NA | Intergenic | NA |
42 | 12p13.32 | chr12 | – | 4720007 | 4720593 | 587 | 94.89 | 6.47 | (0–10) | 4.95 | NA | Intron | AC005833.1 |
43 | 3p14.2 | chr3 | – | 59469489 | 59470030 | 542 | 91.82 | 6.26 | (0–10) | 3.23 | NA | Intron | AC126121.3 |
44 | 1q24.2 | chr1 | + | 168457190 | 168457732 | 543 | 90.80 | 6.19 | (0–10) | 0.37 | NA | Intron | AL023755.1 |
45 | 20p13 | chr20 | – | 2809052 | 2809886 | 835 | 88.42 | 6.03 | (0–10) | 0.38 | Insertion | Intergenic | NA |
46 | 18q21.33 | chr18 | + | 63648105 | 63648555 | 451 | 76.49 | 5.22 | (0–10) | 0.22 | NA | Intron | SERPINB11 |
47 | 17q22 | chr17 | + | 52961655 | 52962071 | 417 | 70.87 | 4.83 | (0–10) | 0.24 | NA | Intergenic | NA |