Table 1 HML-9 provirus distribution
From: Comprehensive identification and characterization of the HERV-K (HML-9) group in the human genome
Number | Locus | Chromosome | Strand | Position start | Position end | Length (bp) | Match + mismatch (bp)/full length (bp) (%) | Range (%) | Qgap (bp)/match + mismatch + Qgap (bp) (%) | Insertion or deletion | Intergenic/intron/exon | Gene including the region |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 16p12.3 | chr16 | − | 19393581 | 19402152 | 8572 | 96.00 | (90–100) | 1.01 | NA | Exon_intron | AC130456.2 |
2 | 2p12 | chr2 | + | 82022660 | 82031279 | 8620 | 95.91 | (90–100) | 1.13 | NA | Intergenic | NA |
3 | 15q21.1 | chr15 | − | 45234477 | 45243073 | 8597 | 95.34 | (90–100) | 1.85 | NA | Exon_intron | AC051619.4 |
4 | 8p11.1 | chr8 | − | 43694016 | 43702583 | 8568 | 95.10 | (90–100) | 2.14 | NA | Intergenic | NA |
5 | 13q31.1 | chr13 | + | 84869526 | 84877320 | 7795 | 86.84 | (80–90) | 6.67 | NA | Exon_intron | AL445588.1 |
6 | 4q33 | chr4 | − | 170126345 | 170133883 | 7539 | 70.03 | (70–80) | 0.79 | Insertion | Intergenic | NA |
7 | 6p12.3 | chr6 | + | 48873675 | 48879725 | 6051 | 64.84 | (60–70) | 34.48 | Deletion | Intergenic | NA |
8 | Yp11.2 | chrY | − | 9273707 | 9279611 | 5905 | 59.83 | (50–60) | 39.23 | Deletion | Intergenic | NA |
9 | 8q24.3 | chr8 | + | 145019974 | 145032719 | 12,746 | 57.06 | (50–60) | 0.79 | Insertion | Intergenic | NA |
10 | Yq11.223 | chrY | + | 21580120 | 21585551 | 5432 | 57.04 | (50–60) | 38.30 | Deletion | Exon_intron | TTTY13 |
11 | 19q13.2 | chr19 | + | 40954172 | 40959178 | 5007 | 56.66 | (50–60) | 41.93 | Deletion | Intergenic | NA |
12 | Yp11.2 | chrY | − | 8121821 | 8126768 | 4948 | 54.57 | (50–60) | 44.92 | Deletion | Intergenic | NA |
13 | Yp11.2 | chrY | + | 8996062 | 9000755 | 4694 | 50.80 | (50–60) | 41.95 | Deletion | Intergenic | NA |
14 | Yq11.222 | chrY | − | 18622534 | 18626952 | 4419 | 47.33 | (40–50) | 52.23 | Deletion | Intergenic | NA |
15 | Yq11.223 | chrY | − | 21845475 | 21850069 | 4595 | 43.18 | (40–50) | 49.78 | Deletion/insertion | Exonic_intergenic | AC024236.1 |
16 | 21q21.1 | chr21 | − | 18563368 | 18566735 | 3368 | 34.26 | (30–40) | 8.19 | NA | Exon_intron | MIR548XHG |
17 | 5q33.3 | chr5 | − | 156660448 | 156663815 | 3368 | 34.14 | (30–40) | 8.50 | NA | Intron | SGCD |
18 | 1q22 | chr1 | − | 155629408 | 155632775 | 3368 | 33.75 | (30–40) | 9.56 | NA | Intron | AL353807.5 |
19 | 7q36.1 | chr7 | − | 150561277 | 150563994 | 2718 | 27.92 | (20–30) | 10.27 | Deletion | Intergenic | NA |
20 | 8q21.13 | chr8 | + | 78652302 | 78654820 | 2519 | 26.60 | (20–30) | 0.30 | NA | Intron | AC068700.2 |
21 | 10q24.2 | chr10 | − | 99822511 | 99825532 | 3022 | 25.36 | (20–30) | 24.65 | Deletion/insertion | Intron | ABCC2 |
22 | 12q13.11 | chr12 | + | 48509228 | 48511681 | 2454 | 18.44 | (10–20) | 33.18 | Deletion/insertion | Intergenic | NA |
23 | Yq11.222 | chrY | − | 17669948 | 17671523 | 1576 | 17.11 | (10–20) | 12.69 | Deletion | Intergenic | NA |