From: Utilization of HIV-1 envelope V3 to identify X4- and R5-specific Tat and LTR sequence signatures
Transcription factor | JASPAR matrix | In vitro confirmed | HXB2 index | Strand direction | X4 mean score | R5 mean score | P value |
---|---|---|---|---|---|---|---|
C/EBP | MA0102.1-CEBPA | Â | 76 | Reverse | 4.55 | 4.06 | 0.3860 |
 | MA0102.2-CEBPA |  | 79 | Reverse | 4.94 | 4.41 | 0.3860 |
 | MA0102.2-CEBPA |  | 81 | Forward | 4.24 | 3.12 | 0.2304 |
 | MA0102.1-CEBPA |  | 150 | Reverse | 5.16 | 3.39 | <0.0001 |
 | MA0102.2-CEBPA |  | 153 | Reverse | 6.35 | 4.58 | <0.0001 |
 | MA0102.2-CEBPA |  | 154 | Forward | 4.53 | 1.83 | <0.0001 |
 | MA0102.1-CEBPA |  | 197 | Reverse | 5.27 | 4.63 | 0.0092 |
 | MA0102.2-CEBPA |  | 200 | Reverse | 4.33 | 4.34 | 0.0063 |
 | MA0102.1-CEBPA | C/EBP II | 278 | Reverse | 5.84 | 6.29 | 0.0005 |
 | MA0102.2-CEBPA | C/EBP II | 281 | Reverse | 5.26 | 5.70 | 0.0010 |
 | MA0102.3-CEBPA | C/EBP II | 281 | Forward | 7.65 | 9.67 | 0.0008 |
 | MA0102.2-CEBPA | C/EBP I | 342 | Forward | 5.26 | 4.65 | <0.0001 |
CREB | MA0018.2-CREB1 | Â | 173 | Forward | 4.74 | 3.93 | 0.1020 |
 | MA0018.2-CREB1 | ATF/CREB | 330 | Forward | 5.25 | 5.63 | 0.4547 |
 | MA0018.2-CREB1 |  | 410 | Reverse | 4.43 | 4.68 | 0.8684 |
NF-kB | MA0105.1-NFKB1 | NF-kB II | 350 | Forward | 13.66 | 14.52 | 0.9605 |
 | MA0105.1-NFKB1 | NF-kB II | 350 | Reverse | 7.43 | 8.30 | 0.9605 |
 | MA0105.2-NFKB1 | NF-kB II | 350 | Forward | 6.67 | 7.41 | 0.9605 |
 | MA0105.3-NFKB1 | NF-kB II | 350 | Forward | 12.37 | 13.41 | 0.9722 |
 | MA0105.1-NFKB1 | NF-kB II | 351 | Reverse | 4.85 | 5.31 | 0.9813 |
 | MA0105.1-NFKB1 | NF-kB I | 363 | Forward | 6.18 | 6.77 | 0.8062 |
 | MA0105.2-NFKB1 | NF-kB I | 363 | Forward | 8.20 | 8.62 | 0.8062 |
 | MA0105.2-NFKB1 | NF-kB I | 363 | Reverse | 7.60 | 7.88 | 0.8345 |
 | MA0105.1-NFKB1 | NF-kB I | 364 | Forward | 14.55 | 14.35 | 1.0000 |
 | MA0105.1-NFKB1 | NF-kB I | 364 | Reverse | 8.33 | 8.26 | 1.0000 |
 | MA0105.2-NFKB1 | NF-kB I | 364 | Forward | 7.44 | 7.29 | 1.0000 |
 | MA0105.3-NFKB1 | NF-kB I | 364 | Forward | 15.66 | 15.15 | 0.8907 |
 | MA0105.1-NFKB1 | NF-kB I | 365 | Reverse | 5.34 | 5.15 | 1.0000 |
 | MA0105.2-NFKB1 | NF-kB | 504 | Forward | 6.09 | 6.46 | 0.9850 |
 | MA0105.2-NFKB1 | NF-kB | 504 | Reverse | 8.56 | 8.83 | 0.9881 |
 | MA0105.1-NFKB1 | NF-kB | 505 | Reverse | 6.01 | 6.30 | 0.9850 |
Sp | MA0079.2-SP1 | Â | 98 | Reverse | 4.68 | 5.68 | 0.0093 |
 | MA0079.1-SP1 |  | 99 | Forward | 5.01 | 5.35 | 0.0093 |
 | MA0079.1-SP1 |  | 223 | Forward | 4.35 | 3.31 | <0.0001 |
 | MA0079.1-SP1 |  | 224 | Forward | 4.57 | 2.05 | <0.0001 |
 | MA0079.1-SP1 |  | 266 | Reverse | 4.36 | 3.37 | 0.1034 |
 | MA0079.2-SP1 | Sp-III | 373 | Reverse | 5.30 | 5.86 | 0.5696 |
 | MA0079.1-SP1 | Sp-III | 374 | Forward | 4.12 | 4.82 | 0.0755 |
 | MA0079.2-SP1 | Sp-III | 376 | Reverse | 5.22 | 6.46 | <0.0001 |
 | MA0079.1-SP1 | Sp-III | 377 | Forward | 3.86 | 5.56 | <0.0001 |
 | MA0079.2-SP1 | Sp-III | 382 | Reverse | 4.71 | 5.81 | <0.0001 |
 | MA0079.2-SP1 | Sp-II | 387 | Reverse | 6.72 | 7.11 | 0.7894 |
 | MA0079.3-SP1 | Sp-II | 387 | Reverse | 10.11 | 10.46 | 0.6982 |
 | MA0079.1-SP1 | Sp-II | 388 | Forward | 5.78 | 6.14 | 0.2648 |
 | MA0079.2-SP1 | Sp-II | 392 | Reverse | 6.62 | 7.07 | 0.1179 |
 | MA0079.2-SP1 | Sp-II | 393 | Reverse | 5.51 | 6.81 | 0.0168 |
 | MA0079.1-SP1 | Sp-I | 398 | Forward | 4.35 | 4.35 | 0.6176 |
 | MA0079.2-SP1 | Sp-I | 398 | Reverse | 6.69 | 7.21 | 0.5383 |
 | MA0079.1-SP1 | Sp-I | 399 | Forward | 4.30 | 4.47 | 0.5539 |
 | MA0079.2-SP1 | Sp-I | 400 | Reverse | 5.78 | 5.83 | 1.0000 |
 | MA0079.1-SP1 |  | 479 | Forward | 5.21 | 5.02 | 0.9279 |