Two distinct variants of simian foamy virus in naturally infected mandrills (Mandrillus sphinx) and cross-species transmission to humans

  • Augustin Mouinga-Ondémé1,

    Affiliated with

    • Edouard Betsem2,

      Affiliated with

      • Mélanie Caron1,

        Affiliated with

        • Maria Makuwa1,

          Affiliated with

          • Bettina Sallé3,

            Affiliated with

            • Noemie Renault4,

              Affiliated with

              • Ali Saib4,

                Affiliated with

                • Paul Telfer5,

                  Affiliated with

                  • Preston Marx5,

                    Affiliated with

                    • Antoine Gessain2 and

                      Affiliated with

                      • Mirdad Kazanji1, 6Email author

                        Affiliated with


                        DOI: 10.1186/1742-4690-7-105

                        Received: 25 May 2010

                        Accepted: 14 December 2010

                        Published: 14 December 2010



                        Each of the pathogenic human retroviruses (HIV-1/2 and HTLV-1) has a nonhuman primate counterpart, and the presence of these retroviruses in humans results from interspecies transmission. The passage of another simian retrovirus, simian foamy virus (SFV), from apes or monkeys to humans has been reported. Mandrillus sphinx, a monkey species living in central Africa, is naturally infected with SFV. We evaluated the natural history of the virus in a free-ranging colony of mandrills and investigated possible transmission of mandrill SFV to humans.


                        We studied 84 semi-free-ranging captive mandrills at the Primate Centre of the Centre International de Recherches Médicales de Franceville (Gabon) and 15 wild mandrills caught in various areas of the country. The presence of SFV was also evaluated in 20 people who worked closely with mandrills and other nonhuman primates. SFV infection was determined by specific serological (Western blot) and molecular (nested PCR of the integrase region in the polymerase gene) assays. Seropositivity for SFV was found in 70/84 (83%) captive and 9/15 (60%) wild-caught mandrills and in 2/20 (10%) humans. The 425-bp SFV integrase fragment was detected in peripheral blood DNA from 53 captive and 8 wild-caught mandrills and in two personnel. Sequence and phylogenetic studies demonstrated the presence of two distinct strains of mandrill SFV, one clade including SFVs from mandrills living in the northern part of Gabon and the second consisting of SFV from animals living in the south. One man who had been bitten 10 years earlier by a mandrill and another bitten 22 years earlier by a macaque were found to be SFV infected, both at the Primate Centre. The second man had a sequence close to SFVmac sequences. Comparative sequence analysis of the virus from the first man and from the mandrill showed nearly identical sequences, indicating genetic stability of SFV over time.


                        Our results show a high prevalence of SFV infection in a semi-free-ranging colony of mandrills, with the presence of two different strains. We also showed transmission of SFV from a mandrill and a macaque to humans.


                        Foamy viruses are members of the Spumavirus genus of the Retroviridae family [1]. These complex exogenous retroviruses are highly prevalent in several animal species, including nonhuman primates, felines, bovines and equines, in which they cause persistent infection [27]. Simian foamy virus (SFV) infection has been reported in 1-6% of people occupationally exposed to nonhuman primates in zoos, primate centres and laboratories, mainly in North America but also in Europe [814]. Recently, naturally acquired SFV infections were described in a group of hunters living in Cameroon, central Africa [15, 16], and in people in frequent contact with various macaque species in Asia [17, 18]. In Cameroon, 3.6% of people who were severely bitten and otherwise injured while hunting gorillas and chimpanzees had detectable SFV infection [16].

                        Foamy viruses are considered to be non-pathogenic in naturally or experimentally infected animals [10, 11, 16, 19, 20]. This apparent lack of pathogenicity strongly contrasts with the cytopathic effect seen in vitro in infected cell cultures, with the characteristic foamy appearance of vacuolized cells [19, 21, 22]. It was suggested recently that the non-pathogenicity of SFV infection in nonhuman primates in vivo is due to replication in a superficial cell niche of the oral mucosa [23].

                        In contrast to lentiviruses, such as HIV and simian immunodeficiency virus (SIV), foamy viruses show little genetic drift in vivo [2, 2427]. Phylogenetic analysis has shown species-specific distribution of foamy viruses, indicating long-term co-evolution with their natural hosts. Switzer et al. suggested that foamy viruses have co-speciated with Old World primates for at least 30 million years [28].

                        While the molecular features of foamy viruses in vitro have been studied extensively [19, 21, 22, 29, 30], little information is available on their epidemiological and viral characteristics in vivo [3, 4, 18, 20, 2426, 31]. The published epidemiological studies indicate that the seroprevalence of antibodies to SFVs in captive adult nonhuman primate populations can reach 75-100% [4, 20, 24]. Although several reports have been published on the prevalence of SFV in semi-free-ranging colonies and wild troops of nonhuman primates [2, 17, 27, 3240], the timing and modes of primary infection in vivo, especially in natura, are still poorly understood.

                        A semi-free-ranging colony of mandrills (Mandrillus sphinx) was created at the Primate Centre of the International Centre for Medical Research (CIRMF) in Gabon in 1983, and more than 140 mandrills are now housed in the Centre [41]. Mandrills are found in the wild in a restricted area of central Africa, in the tropical forests of Cameroon, Equatorial Guinea, Gabon and southern Congo [41]. It has been reported previously that mandrills are naturally infected with SIV (SIVmnd) and simian T-cell leukaemia virus (STLV-1) [4148], but little information is available on SFV infection in mandrills. Calattini et al. reported that a small series of wild-born, wild-caught mandrills in Cameroon as well as five mandrills in the Primate Centre in Gabon were infected with SFV [3]. Furthermore, recent studies showed that interspecies transmission of SFV from mandrills to humans is possible [15, 16, 34].

                        The aim of our study was to evaluate the natural history of mandrill SFV in this free-ranging colony, including the prevalence, modes of transmission, genetic diversity and origin. We also investigated cross-species transmission of mandrill SFVs to people occupationally exposed to these animals.


                        SFV is highly endemic among mandrills, and the prevalence increases significantly with age

                        The seroprevalence of SFV was evaluated in 84 mandrills (mean age, 8 years; range, 1-29), comprising 38 males (mean age, 7 years; range, 1-20) and 46 females (mean age, 8.6 years; range, 2-29). Of these, 28 were juveniles (< 4 years); 36 were sub-adults (5-10 years); 6 were adults (11-15 years), and 14 were old adults (> 16 years) (Table 1). We found by Western blot analysis that 70 of the 84 mandrills had gag doublet reactivity, and they were thus considered SFV seropositive (Figure 1), for an overall seroprevalence of 83%. Four were of indeterminate seropositivity, and the 10 others were considered seronegative. As seen in Table 1 the seroprevalence increased significantly with age (p < 0.001), from 57% in juvenile monkeys to 94% in adults and 100% in older mandrills. No significant difference was found between males (84%) and females (82%).
                        Table 1

                        Seroprevalence and PCR results for SFV in semi-free-ranging mandrills, by age and sex














                        [95% CI]









                        [95% CI]









                        [95% CI]





                        1-4 (juveniles)













                        5-10 (young adults)













                        11-15 (adults)













                        > 16 (old adults)


























                        Figure 1

                        Detection of SFV-specific antibodies by Western blot analysis in mandrill and human plasma samples. Seropositivity was defined by the presence of reactivity to the Gag doublet of 70 kDa and 74 kDa as shown for positive controls (CTRL+). Seronegativity was defined as no bands of the gag doublet observed by Western blot, as in the negative control (CTRL-). Reactivity with a single band in the 70- to 74-kDa molecular mass range was considered indeterminate. The mandrills samples Mnd5DCP, F 19y; Mnd5D3CDP, F 11y; Mnd17A9CDP, M 4y; Mnd2D9CDP, M 6y; Mnd10E5CDP, F 5y; Mnd2DCDP, F 20y; Mnd5MCDP, M 9y; MndNB, M 5y; Mnd17HCDP, M 10y; Mnd12D3CDP, F 15y; Mnd5D3B, F 4y; Mnd2D8CDP, M 7y; Mnd16G2CDP, F 4y; Mnd16iCDP, M 8y and human H1CIRMF and H2CIRMF are seropositive. Only mandrills Mnd2DCDP, MndNB and Mnd5D3B were negative in PCR. The mandrill Mnd17D7CDP, M 4y and the human H3CIRMF are indeterminate; and mandrills Mnd17F4CDP, F 4y and Mnd12O2CDP are seronegative. Mnd: mandrill; CDP: Centre de Primatologie; in the middle: mandrill identity; M: male; F: female; Y: years. The relative molecular masses of SFVcpz-specific Gag protein are indicated on the left (MW). The Western blot positive control is a serum from an SFV-positive chimpanzee [16]. The negative serum was obtained from a person who had never been in contact with a nonhuman primate. H1CIRMF, H2CIRMF, and H3CIRMF are the results of Western blot serology for human samples.

                        Molecular detection of SFV and genetic diversity in mandrills

                        The DNA samples obtained from peripheral blood mononuclear cells (PBMCs) from the 84 mandrills were examined by nested PCR targeting a 425-bp fragment of integrase, a region in the polymerase gene. The 14 seronegative and indeterminate samples were PCR negative. SFV DNA was detected in 61 of 70 seropositive samples (87%); although the other nine mandrills were serologically positive, no SFV DNA could be detected. The sequence of the integrase fragment was obtained for 53 PCR-positive samples (Table 1). Nucleotide sequence comparison showed that 52/53 sequences were closely related, with 94-100% sequence similarity, and they were also closely related to the five SFV sequences previously obtained by Calattini et al. [3]. The one divergent sample, Mnd31CDP, from a wild-born mandrill introduced into the colony at the age of 2 years, showed greater nucleotide divergence (8-9%) than all the other mandrill SFV sequences.

                        The phylogenetic analysis confirmed these findings, as shown in Figure 2. This tree represents the 11 main SFV strains circulating in the colony and, in the insert, all 53 sequences, including the 11 main strains (in colour). These 53 newly obtained SFV strains belong to a large clade comprising all the available sequences from mandrills and drills, with a high bootstrap value (100%). This clade contains two main clusters. The first comprises most of the new sequences and others previously obtained from mandrills, including the five sequences of Calattini et al. [3], from the same breeding centre. The second consists of the unique Mnd31CDP strain, which is localized between the large clade of mandrills and that of drills (Figure 2).
                        Figure 2

                        Phylogenetic relationship of integrase sequences (425 bp) circulating in the mandrill colony at the CIRMF. Phylogenetic tree of the 11 main circulating sequences (in red, mandrills harbouring virus from northern Gabon; in blue, from southern Gabon), representing all sequences in the colony. The five SFV sequences obtained previously by Calattini et al. [3] are identified with an asterisk. The insert shows all 53 sequences, including clone 11 (in colour). All SFV sequences were aligned with ClustalW (1.81) and edited with Bioedit. Phylogenetic analyses were performed with the Bayesian Markov chain Monte Carlo (BMCMC) method implemented in MrBayes 3.1 and the Rtrev model. Sequence AspSFV8spm (from a New World spider monkey) was included as an outgroup. The maximum clade credibility tree topology inferred with FigTree v1.2 is shown. Values above the branches are bootstrap values. All new mandrill sequences are identified by Mnd (for mandrill), a number (frequently followed by a letter) and ending with CDP (Centre de Primatologie, their origin) (vg: Mnd12QCDP). In brackets is the accession number in GenBank.

                        Mandrills in Gabon are naturally infected with two distinct variants of simian foamy virus

                        To determine the origin and distribution of the different clades in the mandrill colony, a 267-bp portion of the cytochrome b sequence was amplified and sequenced from 21 SFV-infected monkeys in the colony and from eight mandrills caught in the wild (Figure 3) in various regions of Gabon (Figure 4).
                        Figure 3

                        Phylogenetic tree from 267 bp of the mitochondrial cytochrome b gene from some of the mandrills in the CIRMF colony. Phylogenetic tree of sequences from 21 mandrills in the colony at the CIRMF (in red) and 8 wild mandrills (in blue) inferred as described in Figure 2. Wild mandrills are indicated as Mnd (for mandrill), a number or a name and Wd (for wild) (vg:Mnd125Wd). An outgroup was a sequence of RCM_27 (from a red-capped mangabey).

                        Figure 4

                        Location of SFV-positive wild mandrills. Map of Gabon, with the capital (Libreville) and main cities (Oyem, Lambaréné, Makokou, and Franceville) and locations of the samples collected from SFV-positive wild mandrills (Mnd and MSP). Line in blue represents the Ogooué River, which divides the country.

                        As seen in the phylogenetic tree, two distinct clusters could be distinguished, with perfect correlation between cytochrome b sequences and the origin of the wild mandrills. One cluster consisted of mandrills from regions north of the Ogooué River and the second of animals from regions south of the Ogooué. The Mnd31CDP cytochrome b sequence clustered with sequences obtained from mandrills originating in southern Gabon, as did 14 of 21 analysed sequences of cytochrome b from our colony. Only six sequences from other mandrills in our colony clustered with sequences from mandrills from northern Gabon (above the Ogooué River, see Figure 4).

                        To confirm the hypothesis that mandrills are infected naturally with two different SFV strains, we amplified and sequenced SFV from DNA in blood or tissue samples collected from eight mandrills (pets or 'bush meat') from northern Gabon and seven from the southern part (Figure 4). Eight SFV sequences were obtained and compared with the SFV in our colony. Phylogenetic analysis confirmed that mandrills are infected with two SFV strains (Figure 5). Mnd31CDP clustered with the SFV obtained from wild monkeys from the south, whereas the other strain clustered with newly obtained viruses from wild northern animals. Cytochrome b phylogenetic analysis also confirmed the geographical separation of the wild mandrills (Figure 3).
                        Figure 5

                        Phylogenetic confirmation of the presence of two circulating SFV strains among mandrills. Phylogenetic tree of the 425-bp fragments of a region of the integrase region in the SFV polymerase gene. All 11 representative strains newly identified from mandrills in the colony (in red) at the CIRMF and the 8 new strains identified from wild mandrills (in blue) located in various regions of the country are shown in the tree. The new strains from mandrills were analysed with SFV sequences obtained from various species of nonhuman primates available in Genbank. The phylogenetic tree was obtained by the Bayesian method implemented in MrBayes version 3.1 software as described in the legend to Figure 2. The names of the different nonhuman primate species included in the tree are listed on the right side of the tree.

                        Transmission of SFV from mandrills to humans

                        We evaluated the possible transmission of mandrill SFV to humans by examining 20 people (15 men and 5 women; mean age, 39 years; range, 20-54) occupationally exposed to mandrills as animal caretakers or veterinarians at the Primatology Centre. The mean duration of exposure to nonhuman primates was 12 years (range, 5 months to 27 years). Two of these people (10%) were found to be SFV-seropositive by Western blotting (Figure 1). The SFV integrase sequence was detected by nested PCR in PBMCs from the two seropositive persons, who were found to be the only ones who had been bitten by nonhuman primates during their work at the Centre. The first person (H1CIRMF) was bitten by a chimpanzee on a finger in 1996 and by a mandrill (Mnd2ACDP) on a shoulder during the same year. The second person (H2CIRMF) recalled a bite on a finger by an unknown monkey in 1985. SFV sequences were obtained from amplified 425-bp integrase fragments in PBMC DNA from the two SFV seropositive persons as well as from the chimpanzee and the mandrill Mnd2ACDP. Phylogenetic analysis (Figure 6) showed that the viruses from H1CIRMF and from mandrill Mnd2ACDP were almost identical, with only one base difference (99.7% nucleotide identity). This sequence was not related to the sequence obtained from the chimpanzee. Phylogenetic analysis of the SFV obtained from the second person showed that the virus was located in the clade of Asian SFVs (bootstrap, 96%) and clustered with Macaca fascicularis (Figure 6). The two SFV-infected humans are healthy and show no clinical signs related to a retroviral infection, 15 years after the bites.
                        Figure 6

                        Phylogenetic tree of the 425-bp fragments of the SFV integrase sequences obtained from two workers at the Primate Centre of the CIRMF. The two cases of SFV infection are in colour: red for the first and blue for the second. The origin of the first SFV sequence (H1CIRMF) is clearly defined as a mandrill (Mnd2ACDP), shown in the same colour. The second SFV sequence (H2CIRMF) clusters with Asian macaque sequences. The tree was inferred as described in Figure 2. Identified by an asterisk are the three published mandrill sequences known to infect humans. Human sequences are indicated by H (for human), a number (1 or 2) and CIRMF (Centre International de recherches Médicales de Franceville), where the study was performed.

                        SFV shows extremely low genetic drift in mandrills and humans

                        To evaluate the genetic variability of SFV in vivo, we investigated the virus population in one mandrill at an interval of 10 years, and we also studied the genetic variation of the virus after transmission to a human through a severe bite. We studied several clones obtained in a single PCR: 18 clones from mandrill Mnd2ACDP in 1996 on the day H1CIRMF was bitten, 13 clones from the same animal 10 years later, and 11 clones from the bitten person 10 years after the bite. Comparative sequence analysis showed strong nucleotide sequence similarity (data not shown), with a major identical strain (12/18 and 9/13 clones identical) among the sequences obtained in the mandrill on day 0 and 10 years later. The major strain (4/11 clones) in the infected person differed by one base from the major mandrill strain. The other clones in the two mandrill and the human samples differed only slightly, with a divergence of one or two bases. Also, as seen in Additional file 1 clones sequenced from H1CIRMF clustered mainly at the top of the tree, while sequences of the clones from Mnd2ACDP clustered in the middle, close to some published sequences. Only one clone sequence from H1CIRMF, CIRMF1C9, was closely related to a clone sequence from Mnd2ACDP (Mnd2AC10Y10).


                        We found a high seroprevalence of SFV in a semi-free-ranging colony of mandrills originating from and living in Gabon, central Africa. The habitat of mandrills is restricted to western central Africa, which is highly endemic for other retroviruses, such as SIV and STLV [4247]. A seroprevalence of 89.5% was found in a small free-ranging macaque population (mostly adults) living in a temple in Bali, Indonesia, with a higher prevalence in adults than in juveniles [18, 31, 39]. A larger study provided evidence that Macaca tonkeana acquire SFV mainly through severe bites, mainly when young adults aged 5-8 years compete for sex partners [27]. In a study of free-ranging colonies of chimpanzees, Liu et al. found a significant increase in SFV infection with age, with no evidence of vertical transmission to the young [32]. In our study, there was a clear increase in SFV infection at 4-5 years of age. Altogether, these findings indicate horizontal rather than vertical (perinatal) transmission as the predominant route of SFV infection in these nonhuman primate communities. Nevertheless, some species or colony specificity may be found in natura among troops of nonhuman primates, which might change the relative importance of different modes and thus the timing of SFV transmission.

                        It is known that a similar virus can be transmitted quite differently in different nonhuman primate species: STLV-1 appears to be acquired mainly in breast milk in M. tonkeana [27] but is acquired mainly in adulthood in chimpanzees [18, 33, 49]; in mandrills, it is probably acquired through bites [42, 4648, 50] and to a lesser extent by sexual contact, and a predator-prey system may sometimes be also involved [49]. In our mandrill colony, about 50 animals were SFV-positive at the age of 1 year, perhaps due to exchange of saliva with their mother during feeding. It was reported recently that mandrills have a prominent muzzle-muzzle behaviour, usually between young naive and older individuals [51, 3444]. It has also been reported that salivary glands are the major reservoir of SFV replication in monkeys [23, 26, 29]. We did not observe any difference in seroprevalence according to the sex of the animals. SFV seroprevalence increased significantly with age. These findings are similar to those on the seroprevalence of STLV-1 in this colony, which was evaluated at 13.4% [52].

                        Our study indicates that all except one integrase sequence of the SFV strains circulating in the colony are closely related, and some are identical. The probable explanation is related to the history of the colony, which was founded in 1983 with only a few animals, some of which probably harboured a virus originating from northern Gabon. The virus was therefore transmitted and spread in the colony during the past 25 years by the founders from the northern part of the country. Ten different strains are circulating in the northern group, with 96-99% sequence similarity. Similar observations have been made with regard to the circulation of several strains in other nonhuman primates, including monkeys and apes [2, 17, 27, 53].

                        The animal that harboured the eleventh strain circulating in the colony, which is quite different from the other strains, was a wild-born mandrill brought to the Primate Centre in 2003 from the southern part of the country at the age of 2 years. It was kept in quarantine for 6 months and then introduced into the mandrill colony. Dissemination of the virus could occur in several ways, as indicated above, but also because one of the infected mandrills is a dominant male in the colony. This hypothesis cannot, however, be confirmed, since no sample was available from the first mandrills introduced into the colony.

                        Our finding that two different strains exist in the colony suggests that mandrills living currently in northern and southern Gabon are infected by two different SFV strains. Similar situations have been reported for two other retroviruses that infect these monkey species, SIV [43] and STLV-1 [47]. As seen in Figure 3 the cytochrome b study showed that most of the mandrills are from the south but are infected with a SFV strain from the north. This suggests that they were infected in the breeding colony by a SFV virus from a mandrill originating from the north (Figure 2), except for mandrill 31 (see above). In contrast, the origin of each wild mandrill (Figure 3) was concordant with the virus they harboured (Figure 5), confirming infection in their natural area. Furthermore, studies of cytochrome b polymorphism suggest that the Ogooué River separates mandrill populations into two different phylogenetic groups: one in the north (northern Gabon and Cameroon) and the other south of the River (southern Gabon and Congo) [54].

                        Monkeys have a long co-existence with their SFV [2, 24, 28, 32, 33, 53, 55, 56], which would have started when mandrills in both the north and the south had a common ancestor and has persisted since their separation, about 800 000 years ago [54]. These results for SFV infection in mandrills are supported by the fact that the same mandrills are infected with SIV [43] and STLV [47]. Our analysis of the results for 15 wild mandrills caught in the northern and southern parts of Gabon clearly indicates the existence of two different variant strains of SFV. The discrepancy in our study between serological data and the absence of the SFV sequence in mandrill PBMCs may be due to a low viral load in blood samples. In some juveniles, it could be the result of high levels of maternal antibodies against SFV [2].

                        We also found that two of 20 people working at the Primate Centre were infected with SFVs: one with a mandrill strain and the second with a macaque virus. Only about 50 people worldwide have been shown to be SFV-infected (both serologically and molecularly) [13, 14], including people occupationally exposed to nonhuman primates [12, 25] and people at risk in natural settings, such as hunters in central Africa [15, 16]. Furthermore, only three other human infections with mandrill SFV have been reported. In the first case, a hunter living in Cameroon was found to be infected by a mandrill strain, but the route of infection was not documented [15]. The second case was in a blood donor in Cameroon, also with no information on the route of infection [34]. In the third case, a man aged 26 years had been bitten by a small monkey while hunting 1 year before the presence of mandrill SFV was found [16]. We demonstrated the identity of the viral foamy strain in the donor (Mnd2ACDP) by molecular sequencing at the time of the bite that probably transmitted the virus, and in the human recipient 10 years later, with 99% similarity between the two sequences. This person had been bitten only once by mandrill Mnd2ACDP and not by other mandrills. The presence of a sequence from the clones of H1CIRMF (CIRMF1C9) among clone sequences from Mnd2ACDP, particularly Mnd2AC10Y0 (Additional file 1), sustains the hypothesis of the origin of H1CIRMF virus from Mnd2ACDP. No close sequence similarity was found between the H1CIRMF sequence and the three other sequences previously found in humans infected by a mandrill SFV [15, 16, 34] (Figure 6).

                        Only one molecular demonstration of SFV interspecies transmission has previously been reported, due to a bite by a chimpanzee to a zoo worker [12]. Although the person infected by the mandrill virus in our study had also been bitten during his professional activity by a chimpanzee, we were unable to detect any chimpanzee SFV sequence in his PBMCs. 'Dual' risks with only one virus detectable by PCR have also been reported in hunters in south Cameroon [16]. Co-infection with two different simian viruses was demonstrated recently in chimpanzees infected not only with their own chimpanzee SFV, but also with a Colobus strain [49]. The second human was infected with a strain related to a macaque SFV. Despite the use of thousands of macaques in biomedical research, primate facilities and institutions for decades (in both Europe and North America), only one case of human infection with a macaque foamy virus has been reported (in a worker in Canada after a severe bite) [9]. In contrast, recent studies in Asia showed transmission of macaque SFV to nine people, including zoo workers, owners of nonhuman primate pets, 'bush meat' hunters and temple workers [17, 18]. Mathematical modeling shows that, in Bali, about six of every 1000 visitors to monkey temples will be infected with SFV [39].

                        In our work, we also observed high stability of the integrase sequence of SFV over time (10 years in an infected mandrill as well as in an infected human), with neither genetic drift over time nor the presence of quasi-species. Foamy viruses are genetically very stable [57] and, with the exception of cross-species transmissions, have co-evolved with their hosts [28]. Their high genome conservation often allows attribution to a particular monkey or ape subspecies through analysis of the appropriate foamy virus sequence [27, 32, 33]. Furthermore, in cross-species transmission to humans or apes, the transmitted virus can be easily traced back to the transmitting monkey species and appears to be genetically stable in the new host for decades [53, 58, 59].

                        In conclusion, we have shown that SFV is highly endemic in mandrills in Gabon, and this virus can be transmitted to humans. Further studies are being conducted to evaluate the prevalence of this virus in larger samples from various monkey species in central Africa. We are also studying the natural transmission of these viruses to human populations living in this geographical area, where consumption of 'bush meat' and hunting are common.

                        Materials and methods

                        Mandrills and biological samples

                        We studied 84 mandrills in the semi-free-ranging colony housed at the Primatology Centre of the International Centre for Medical Research in Franceville, Gabon. Wild-born, wild-caught animals and animals born at the Centre were maintained in accordance with the guidelines of the United States National Institutes of Health. The six male and eight female mandrills that founded the colony were brought from various parts of Gabon and released into the enclosure in 1983 [43, 46]. A small colony of macaques (M. fascicularis) was also founded in 1983. Blood samples from monkeys in this colony are collected every year, stored at -80°C and tested for different retroviruses, including SFV. Thus, between November 2006 and January 2007, 7 ml of blood were collected from mandrills in EDTA-K2 tubes under ketamine HCl anaesthesia (10 mg/kg body weight). Plasma and PBMCs obtained after Ficoll separation were kept frozen.

                        Wild mandrills were collected in cities and villages throughout the country and in the Lopé Reserve. We collected blood samples from locally captured live animals (pets) and from wild mandrills as previously described [43]. Small amounts of tissue (donated by hunters) were also collected from fresh cadavers in villages or on markets [54]. No money or favours were exchanged for these samples in order to prevent any increase in demand for 'bush meat'. All samples were collected with the approval of the Gabonese Government and in accordance with national laws. Tissue samples were immediately preserved and then stored at -20°C until tested.

                        To evaluate possible transmission of SFV from mandrills to humans, blood was collected from caretakers or veterinarians working at the Primatology Centre. The participants were volunteers, and fully informed consent was obtained from each person before testing. The samples were anonymous, but age and information about the contact, such as a bite, scratches or other wounds, were retained (for 12 years of mean length of potential exposure to animals). The study obtained ethical clearance from the public health authorities.

                        Serological studies

                        Plasma from mandrills was screened for the presence of foamy virus antibodies as described previously [4, 25, 60]. Briefly, a Western blot assay was performed with an SFV-infected BHK-21 cell line as the source of foamy viral antigens [27]. Plasma was tested at 1:100 dilution. Western blot seropositivity was defined as the presence of reactivity to the Gag doublet of 70 kDa and 74 kDa, as previously described [4]. Samples without reactivity to either Gag protein were considered seronegative, and those with reactivity to a single band in the 70- to 74-kDa molecular mass range were considered indeterminate. The Western blot positive control was serum from an SFV-positive chimpanzee, used by Calattini et al. [16]. The negative serum was obtained from a human who had never been in contact with a nonhuman primate.

                        Molecular studies

                        High relative molecular mass genomic DNA was extracted from PBMCs from the tested animals and tested against several positive and negative controls with the Qiagen kit (QIAmp blood Mini Kit, Courtaboeuf, France). The first round of PCR involved a described set of primers [61] (primer 1: GCC ACC CAA GGG AGT TAT GTG G, and primer 2: GCT GCA CCC TGA TCA GAG TG) for amplifying an integrase fragment of 590 bp (a region in the polymerase gene), under the following conditions: 40 cycles of 30 s of denaturation at 94°C, 30 s of annealing at 55°C and 1 min of extension at 72°C. A 425-bp fragment corresponding to another portion of the integrase was amplified under the same conditions with nested primers (primer 3: CCT GGA TGC AGA GTT GGA TC and primer 4: GAA GGA GCC TTA GTG GGG TA), as reported previously [25, 60, 61].

                        The presence and quality of the extracted DNA were verified by amplifying an albumin gene fragment. Amplification and detection of albumin were carried out as described for SFV pol sequences, but with specific primers (forward: AlbF: GCT GTC ATC TCT TGT GGG CTG T and reverse: AlbR: ACT CAT GGG AGC TGC TGG TTC) [62]. Molecular amplification was also performed, with the same program, to study the 267-bp cytochrome b region, which was sufficiently variable to differentiate the northern and southern populations of mandrills [54] with these specific primers: L14725: CGA AGC TTG ATATGA AAA ACC ATC GTT G and H15149: AAA CTG CAG CCCCTC AGA ATG ATA TTT GTC CTC A [63]. Positive PCR products were directly sequenced. In order to evaluate genetic drift in vivo, purified PCR products were cloned with the pCR2.1 TOPO plasmid (Invitrogen, Carlsbad, California, USA), and various positive clones were selected, extracted, purified and sequenced with an automatic sequencing system (GATC, Germany).

                        Nucleotide sequence accession numbers

                        All the SFV and cytochrome b sequences from mandrills and humans obtained in this study have been submitted to GenBank as cytochrome b (accession numbers GU169713 to GU169741) and SFV (accession numbers GU169742 to GU169847).

                        Phylogenetic analysis

                        For the phylogenetic analysis, the new SFV sequences were aligned with the ClustalW (1.81) program [64] and then analysed and edited with Bioedit http://​www.​mbio.​ncsu.​edu/​BioEdit/​bioedit.​html. The final alignment was submitted to the the Bayesian method implemented in MrBayes version 3.1 software (2005) [65] with the Jones, Taylor and Thornton model [66] and the rtREV model [67] of evolution and gamma distributed rates at sites, with one million generations and burn-in of 2.5%. Bayesian parameters were examined with the Tracer program http://​evolve.​zoo.​ox.​ac.​uk/​Evolve/​Software.​html to determine convergence to a stable log likelihood value. Likelihood traces between replicate runs were compared for convergence to similar log likelihood values. All estimated sample sizes were greater than 545 [68]. If replicate runs converged, all trees after burn-in were combined to create a single consensus tree. BMCMC posterior probability values represent the proportion of MCMC samples that contain a particular node. The final phylogenetic tree was obtained by majority rule consensus and after editing with the graphic resources contained in the FigTree v1.2 software http://​tree.​bio.​ed.​ac.​uk/​software/​figtree.

                        Statistical analysis

                        SFV serological status in relation to sex and age group was analysed statistically by the chi-squared test with Yates correction, and prevalence and odds ratios were calculated. The corresponding 95% confidence intervals were reported as measures of statistical significance. The Mann-Whitney U test was also used for statistical analysis. Significance was assumed at p < 0.05. All analyses were performed with Statistica software v7.1 (StatSoft France, http://​www.​statsoft.​fr).



                        We thank the CIRMF, which is funded by the Gabonese Government, Total-Gabon and the French Foreign Ministry. We thank Dr Olivier Bourry, Dr Nina Jaffré and Dr Delphine Verrier for technical help. The funders had no role in the study design, data collection or analysis, the decision to publish or preparation of the manuscript.

                        Authors’ Affiliations

                        Unité de Rétrovirologie, Centre International de Recherches Médicales de Franceville
                        Unité d'Epidémiologie et Physiopathologie des Virus Oncogènes, URA CNRS 3015, Institut Pasteur
                        Centre de Primatologie, Centre International de Recherches Médicales de Franceville
                        CNRS UMR7212, INSERM U944, Institut Universitaire d'Hématologie, Conservatoire National des Arts et Métiers
                        Tulane National Primate Research Center
                        Réseau International des Instituts Pasteur, Institut Pasteur


                        1. Hooks JJ, Gibbs CJ Jr: The foamy viruses. Bacteriol Rev 1975, 39: 169–185.PubMed
                        2. Blewett EL, Black DH, Lerche NW, White G, Eberle R: Simian foamy virus infections in a baboon breeding colony. Virology 2000, 278: 183–193.PubMedView Article
                        3. Calattini S, Nerrienet E, Mauclere P, Georges-Courbot MC, Saib A, Gessain A: Natural simian foamy virus infection in wild-caught gorillas, mandrills and drills from Cameroon and Gabon. J Gen Virol 2004, 85: 3313–3317.PubMedView Article
                        4. Hussain AI, Shanmugam V, Bhullar VB, Beer BE, Vallet D, Gautier-Hion A, Wolfe ND, Karesh WB, Kilbourn AM, Tooze Z, Heneine W, Switzer WM: Screening for simian foamy virus infection by using a combined antigen Western blot assay: evidence for a wide distribution among Old World primates and identification of four new divergent viruses. Virology 2003, 309: 248–257.PubMedView Article
                        5. McClure MO, Bieniasz PD, Schulz TF, Chrystie IL, Simpson G, Aguzzi A, Hoad JG, Cunningham A, Kirkwood J, Weiss RA: Isolation of a new foamy retrovirus from orangutans. J Virol 1994, 68: 7124–7130.PubMed
                        6. Saib A: Non-primate foamy viruses. Curr Top Microbiol Immunol 2003, 277: 197–211.PubMed
                        7. Tobaly-Tapiero J, Bittoun P, Neves M, Guillemin MC, Lecellier CH, Puvion-Dutilleul F, Gicquel B, Zientara S, Giron ML, de The H, Saib A: Isolation and characterization of an equine foamy virus. J Virol 2000, 74: 4064–4073.PubMedView Article
                        8. Sandstrom PA, Phan KO, Switzer WM, Fredeking T, Chapman L, Heneine W, Folks TM: Simian foamy virus infection among zoo keepers. Lancet 2000, 355: 551–552.PubMedView Article
                        9. Brooks JI, Rud EW, Pilon RG, Smith JM, Switzer WM, Sandstrom PA: Cross-species retroviral transmission from macaques to human beings. Lancet 2002, 360: 387–388.PubMedView Article
                        10. Heneine W, Switzer WM, Sandstrom P, Brown J, Vedapuri S, Schable CA, Khan AS, Lerche NW, Schweizer M, Neumann-Haefelin D, Chapman LE, Folks TM: Identification of a human population infected with simian foamy viruses. Nat Med 1998, 4: 403–407.PubMedView Article
                        11. Schweizer M, Falcone V, Gange J, Turek R, Neumann-Haefelin D: Simian foamy virus isolated from an accidentally infected human individual. J Virol 1997, 71: 4821–4824.PubMed
                        12. Switzer WM, Bhullar V, Shanmugam V, Cong ME, Parekh B, Lerche NW, Yee JL, Ely JJ, Boneva R, Chapman LE, Folks TM, Heneine W: Frequent simian foamy virus infection in persons occupationally exposed to nonhuman primates. J Virol 2004, 78: 2780–2789.PubMedView Article
                        13. Khan AS: Simian foamy virus infection in humans: prevalence and management. Expert Rev Anti Infect Ther 2009, 7: 569–580.PubMedView Article
                        14. Gessain A, Calattini S: Emergence of simian foamy viruses in humans: facts and unanswered questions. Future Virol 2008, 3: 71–81.View Article
                        15. Wolfe ND, Switzer WM, Carr JK, Bhullar VB, Shanmugam V, Tamoufe U, Prosser AT, Torimiro JN, Wright A, Mpoudi-Ngole E, McCutchan FE, Birx DL, Folks TM, Burke DS, Heneine W: Naturally acquired simian retrovirus infections in central African hunters. Lancet 2004, 363: 932–937.PubMedView Article
                        16. Calattini S, Betsem EB, Froment A, Mauclere P, Tortevoye P, Schmitt C, Njouom R, Saib A, Gessain A: Simian foamy virus transmission from apes to humans, rural Cameroon. Emerg Infect Dis 2007, 13: 1314–1320.PubMed
                        17. Jones-Engel L, Engel GA, Schillaci MA, Rompis A, Putra A, Suaryana KG, Fuentes A, Beer B, Hicks S, White R, Wilson B, Allan JS: Primate-to-human retroviral transmission in Asia. Emerg Infect Dis 2005, 11: 1028–1035.PubMed
                        18. Jones-Engel L, May CC, Engel GA, Steinkraus KA, Schillaci MA, Fuentes A, Rompis A, Chalise MK, Aggimarangsee N, Feeroz MM, Grant R, Allan JS, Putra A, Wandia IN, Watanabe R, Kuller L, Thongsawat S, Chaiwarith R, Kyes RC, Linial ML: Diverse contexts of zoonotic transmission of simian foamy viruses in Asia. Emerg Infect Dis 2008, 14: 1200–1208.PubMedView Article
                        19. Linial M: Why aren't foamy viruses pathogenic? Trends Microbiol 2000, 8: 284–289.PubMedView Article
                        20. Meiering CD, Linial ML: Historical perspective of foamy virus epidemiology and infection. Clin Microbiol Rev 2001, 14: 165–176.PubMedView Article
                        21. Delelis O, Lehmann-Che J, Saib A: Foamy viruses-a world apart. Curr Opin Microbiol 2004, 7: 400–406.PubMedView Article
                        22. Lecellier CH, Saib A: Foamy viruses: between retroviruses and pararetroviruses. Virology 2000, 271: 1–8.PubMedView Article
                        23. Murray SM, Picker LJ, Axthelm MK, Linial ML: Expanded tissue targets for foamy virus replication with simian immunodeficiency virus-induced immunosuppression. J Virol 2006, 80: 663–670.PubMedView Article
                        24. Broussard SR, Comuzzie AG, Leighton KL, Leland MM, Whitehead EM, Allan JS: Characterization of new simian foamy viruses from African nonhuman primates. Virology 1997, 237: 349–359.PubMedView Article
                        25. Schweizer M, Turek R, Hahn H, Schliephake A, Netzer KO, Eder G, Reinhardt M, Rethwilm A, Neumann-Haefelin D: Markers of foamy virus infections in monkeys, apes, and accidentally infected humans: appropriate testing fails to confirm suspected foamy virus prevalence in humans. AIDS Res Hum Retroviruses 1995, 11: 161–170.PubMedView Article
                        26. Falcone V, Leupold J, Clotten J, Urbanyi E, Herchenroder O, Spatz W, Volk B, Bohm N, Toniolo A, Neumann-Haefelin D, Schweizer M: Sites of simian foamy virus persistence in naturally infected African green monkeys: latent provirus is ubiquitous, whereas viral replication is restricted to the oral mucosa. Virology 1999, 257: 7–14.PubMedView Article
                        27. Calattini S, Wanert F, Thierry B, Schmitt C, Bassot S, Saib A, Herrenschmidt N, Gessain A: Modes of transmission and genetic diversity of foamy viruses in a Macaca tonkeana colony. Retrovirology 2006, 3: 23.PubMedView Article
                        28. Switzer WM, Salemi M, Shanmugam V, Gao F, Cong ME, Kuiken C, Bhullar V, Beer BE, Vallet D, Gautier-Hion A, Tooze Z, Villinger F, Holmes EC, Heneine W: Ancient co-speciation of simian foamy viruses and primates. Nature 2005, 434: 376–380.PubMedView Article
                        29. Falcone V, Schweizer M, Neumann-Haefelin D: Replication of primate foamy viruses in natural and experimental hosts. Curr Top Microbiol Immunol 2003, 277: 161–180.PubMed
                        30. Lee EG, Linial ML: The C terminus of foamy retrovirus Gag contains determinants for encapsidation of Pol protein into virions. J Virol 2008, 82: 10803–10810.PubMedView Article
                        31. Jones-Engel L, Steinkraus KA, Murray SM, Engel GA, Grant R, Aggimarangsee N, Lee BP, May C, Schillaci MA, Somgird C, Sutthipat T, Vojtech L, Zhao J, Linial ML: Sensitive assays for simian foamy viruses reveal a high prevalence of infection in commensal, free-ranging Asian monkeys. J Virol 2007, 81: 7330–7337.PubMedView Article
                        32. Liu W, Worobey M, Li Y, Keele BF, Bibollet-Ruche F, Guo Y, Goepfert PA, Santiago ML, Ndjango JB, Neel C, Clifford SL, Sanz C, Kamenya S, Wilson ML, Pusey AE, Gross-Camp N, Boesch C, Smith V, Zamma K, Huffman MA, Mitani JC, Watts DP, Peeters M, Shaw GM, Switzer WM, Sharp PM, Hahn BH: Molecular ecology and natural history of simian foamy virus infection in wild-living chimpanzees. PLoS Pathog 2008, 4: e1000097.PubMedView Article
                        33. Verschoor EJ, Langenhuijzen S, Bontjer I, Fagrouch Z, Niphuis H, Warren KS, Eulenberger K, Heeney JL: The phylogeography of orangutan foamy viruses supports the theory of ancient repopulation of Sumatra. J Virol 2004, 78: 12712–12716.PubMedView Article
                        34. Switzer WM, Garcia AD, Yang C, Wright A, Kalish ML, Folks TM, Heneine W: Coinfection with HIV-1 and simian foamy virus in west central Africans. J Infect Dis 2008, 197: 1389–1393.PubMedView Article
                        35. Schillaci MA, Jones-Engel L, Engel GA, Paramastri Y, Iskandar E, Wilson B, Allan JS, Kyes RC, Watanabe R, Grant R: Prevalence of enzootic simian viruses among urban performance monkeys in Indonesia. Trop Med Int Health 2005, 10: 1305–1314.PubMedView Article
                        36. Goldberg TL, Sintasath DM, Chapman CA, Cameron KM, Karesh WB, Tang S, Wolfe ND, Rwego IB, Ting N, Switzer WM: Coinfection of Ugandan red colobus (Procolobus [Piliocolobus] rufomitratus tephrosceles) with novel, divergent delta-, lenti-, and spumaretroviruses. J Virol 2009, 83: 11318–11329.PubMedView Article
                        37. Morozov VA, Leendertz FH, Junglen S, Boesch C, Pauli G, Ellerbrok H: Frequent foamy virus infection in free-living chimpanzees of the Tai National Park (Cote d'Ivoire). J Gen Virol 2009, 90: 500–506.PubMedView Article
                        38. Engel GA, Pizarro M, Shaw E, Cortes J, Fuentes A, Barry P, Lerche N, Grant R, Cohn D, Jones-Engel L: Unique pattern of enzootic primate viruses in Gibraltar macaques. Emerg Infect Dis 2008, 14: 1112–1115.PubMedView Article
                        39. Jones-Engel L, Engel GA, Heidrich J, Chalise M, Poudel N, Viscidi R, Barry PA, Allan JS, Grant R, Kyes R: Temple monkeys and health implications of commensalism, Kathmandu, Nepal. Emerg Infect Dis 2006, 12: 900–906.PubMed
                        40. Calattini S, Nerrienet E, Mauclere P, Georges-Courbot MC, Saib A, Gessain A: Detection and molecular characterization of foamy viruses in central African chimpanzees of the Pan troglodytes troglodytes and Pan troglodytes vellerosus subspecies. J Med Primatol 2006, 35: 59–66.PubMedView Article
                        41. Souquiere S, Onanga R, Makuwa M, Pandrea I, Ngari P, Rouquet P, Bourry O, Kazanji M, Apetrei C, Simon F, Roques P: Simian immunodeficiency virus types 1 and 2 (SIV mnd 1 and 2) have different pathogenic potentials in rhesus macaques upon experimental cross-species transmission. J Gen Virol 2009, 90: 488–499.PubMedView Article
                        42. Georges-Courbot MC, Moisson P, Leroy E, Pingard AM, Nerrienet E, Dubreuil G, Wickings EJ, Debels F, Bedjabaga I, Poaty-Mavoungou V, Hahn NT, Georges AJ: Occurrence and frequency of transmission of naturally occurring simian retroviral infections (SIV, STLV, and SRV) at the CIRMF Primate Center, Gabon. J Med Primatol 1996, 25: 313–326.PubMed
                        43. Souquiere S, Bibollet-Ruche F, Robertson DL, Makuwa M, Apetrei C, Onanga R, Kornfeld C, Plantier JC, Gao F, Abernethy K, White LJ, Karesh W, Telfer P, Wickings EJ, Mauclère P, Marx PA, Barré-Sinoussi F, Hahn BH, Müller-Trutwin MC, Simon F: Wild Mandrillus sphinx are carriers of two types of lentivirus. J Virol 2001, 75: 7086–7096.PubMedView Article
                        44. Onanga R, Kornfeld C, Pandrea I, Estaquier J, Souquiere S, Rouquet P, Mavoungou VP, Bourry O, M'Boup S, Barre-Sinoussi F, Simon F, Apetrei C, Roques P, Müller-Trutwin MC: High levels of viral replication contrast with only transient changes in CD4(+) and CD8(+) cell numbers during the early phase of experimental infection with simian immunodeficiency virus SIVmnd-1 in Mandrillus sphinx . J Virol 2002, 76: 10256–10263.PubMedView Article
                        45. Pandrea I, Onanga R, Souquiere S, Mouinga-Ondeme A, Bourry O, Makuwa M, Rouquet P, Silvestri G, Simon F, Roques P, Apetrei C: Paucity of CD4+ CCR5+ T cells may prevent transmission of simian immunodeficiency virus in natural nonhuman primate hosts by breast-feeding. J Virol 2008, 82: 5501–5509.PubMedView Article
                        46. Nerrienet E, Amouretti X, Muller-Trutwin MC, Poaty-Mavoungou V, Bedjebaga I, Nguyen HT, Dubreuil G, Corbet S, Wickings EJ, Barre-Sinoussi F, Georges AJ, Georges-Courbot MC: Phylogenetic analysis of SIV and STLV type I in mandrills ( Mandrillus sphinx ): indications that intracolony transmissions are predominantly the result of male-to-male aggressive contacts. AIDS Res Hum Retroviruses 1998, 14: 785–796.PubMedView Article
                        47. Makuwa M, Souquiere S, Clifford SL, Telfer PT, Salle B, Bourry O, Onanga R, Mouinga-Ondeme A, Wickings EJ, Abernethy KA, Rouquet P, Simon F, Roques P: Two distinct STLV-1 subtypes infecting Mandrillus sphinx follow the geographic distribution of their hosts. AIDS Res Hum Retroviruses 2004, 20: 1137–1143.PubMedView Article
                        48. Mahieux R, Chappey C, Georges-Courbot MC, Dubreuil G, Mauclere P, Georges A, Gessain A: Simian T-cell lymphotropic virus type 1 from Mandrillus sphinx as a simian counterpart of human T-cell lymphotropic virus type 1 subtype D. J Virol 1998, 72: 10316–10322.PubMed
                        49. Leendertz FH, Zirkel F, Couacy-Hymann E, Ellerbrok H, Morozov VA, Pauli G, Hedemann C, Formenty P, Jensen SA, Boesch C, Junglen S: Interspecies transmission of simian foamy virus in a natural predator-prey system. J Virol 2008, 82: 7741–7744.PubMedView Article
                        50. Nerrienet E, Meertens L, Kfutwah A, Foupouapouognigni Y, Gessain A: Molecular epidemiology of simian T-lymphotropic virus (STLV) in wild-caught monkeys and apes from Cameroon: a new STLV-1, related to human T-lymphotropic virus subtype F, in a Cercocebus agilis . J Gen Virol 2001, 82: 2973–2977.PubMed
                        51. Laidre ME: Informative breath: olfactory cues sought during social foraging among Old World monkeys ( Mandrillus sphinx , M. leucophaeus , and Papio anubis ). J Comp Psychol 2009, 123: 34–44.PubMedView Article
                        52. Souquiere S, Mouinga-Ondeme A, Makuwa M, Hermine O, Kazanji M: Dynamic interaction between STLV-1 proviral load and T-cell response during chronic infection and after immunosuppression in non-human primates. PLoS One 2009, 4: e6050.PubMedView Article
                        53. Schweizer M, Schleer H, Pietrek M, Liegibel J, Falcone V, Neumann-Haefelin D: Genetic stability of foamy viruses: long-term study in an African green monkey population. J Virol 1999, 73: 9256–9265.PubMed
                        54. Telfer PT, Souquiere S, Clifford SL, Abernethy KA, Bruford MW, Disotell TR, Sterner KN, Roques P, Marx PA, Wickings EJ: Molecular evidence for deep phylogenetic divergence in Mandrillus sphinx . Mol Ecol 2003, 12: 2019–2024.PubMedView Article
                        55. Schweizer M, Neumann-Haefelin D: Phylogenetic analysis of primate foamy viruses by comparison of pol sequences. Virology 1995, 207: 577–582.PubMedView Article
                        56. Thumer L, Rethwilm A, Holmes EC, Bodem J: The complete nucleotide sequence of a New World simian foamy virus. Virology 2007, 369: 191–197.PubMedView Article
                        57. Gartner K, Wiktorowicz T, Park J, Mergia A, Rethwilm A, Scheller C: Accuracy estimation of foamy virus genome copying. Retrovirology 2009, 6: 32.PubMedView Article
                        58. Boneva RS, Switzer WM, Spira TJ, Bhullar VB, Shanmugam V, Cong ME, Lam L, Heneine W, Folks TM, Chapman LE: Clinical and virological characterization of persistent human infection with simian foamy viruses. AIDS Res Hum Retroviruses 2007, 23: 1330–1337.PubMedView Article
                        59. Heneine W, Schweizer M, Sandstrom P, Folks T: Human infection with foamy viruses. Curr Top Microbiol Immunol 2003, 277: 181–196.PubMed
                        60. Khabbaz RF, Heneine W, George JR, Parekh B, Rowe T, Woods T, Switzer WM, McClure HM, Murphey-Corb M, Folks TM: Brief report: infection of a laboratory worker with simian immunodeficiency virus. N Engl J Med 1994, 330: 172–177.PubMedView Article
                        61. Schweizer M, Turek R, Reinhardt M, Neumann-Haefelin D: Absence of foamy virus DNA in Graves' disease. AIDS Res Hum Retroviruses 1994, 10: 601–605.PubMedView Article
                        62. Laurendeau I, Bahuau M, Vodovar N, Larramendy C, Olivi M, Bieche I, Vidaud M, Vidaud D: TaqMan PCR-based gene dosage assay for predictive testing in individuals from a cancer family with INK4 locus haploinsufficiency. Clin Chem 1999, 45: 982–986.PubMed
                        63. Irwin DM, Kocher TD, Wilson AC: Evolution of the cytochrome b gene of mammals. J Mol Evol 1991, 32: 128–144.PubMedView Article
                        64. Thompson JD, Higgins DG, Gibson TJ: CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994, 22: 4673–4680.PubMedView Article
                        65. Ronquist F, Huelsenbeck JP: MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19: 1572–1574.PubMedView Article
                        66. Jones DT, Taylor WR, Thornton JM: The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 1992, 8: 275–282.PubMed
                        67. Dimmic MW, Rest JS, Mindell DP, Goldstein RA: rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. J Mol Evol 2002, 55: 65–73.PubMedView Article
                        68. Drummond AJ, Rambaut A: BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7: 214.PubMedView Article


                        © Mouinga-Ondémé et al. 2010

                        This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://​creativecommons.​org/​licenses/​by/​2.​0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.