| SL1 version | nts folded | ΔG |
---|
HIV-2 | short | 408–436 | -10.2 |
HIV-2 | stem B | 392–444 | -18.2 |
HIV-2 | extended stem B | 392–449 a | -36.4 |
SIV | short | 409–433 | -7 |
SIV | stem B | 393–445 | -15.9 |
HIV-1 | short | 248–270 | -6.7 |
HIV-1 | stem B | 243–277 | -10.9 b |
- The indicated energies are given for the most stable (initial ΔG value) secondary structure.
- a: nts 437 and 438 have been substituted by seven nts (Figure 6C). Thus nt 444 would be numbered 449 in this mutated sequence.
- b: The indicated energy is given for the structure described in Figure 5C that was obtained with a constrained 243–277 base pair. Without constraint, the lower part of stem C in the most stable structure folds with a 243–272 base pair (as studied in [48]).