Sample | M | N | H | AA % | DNA % | dN/dS | PNGS | V1V5 length | Co-receptor usage | Cause of death |
---|---|---|---|---|---|---|---|---|---|---|
1449 i02m | 2 | 26 | 21 | 0.6 | 0.3 | 0.71 | 21(18–21) | 330(330-330) | CCR5 |  |
1449 i04m | 4 | 44 | 37 | 1.1 | 0.5 | 1.15 | 21(20–22) | 330(323–330) |  |  |
1449 i08m | 8 | 43 | 42 | 1.9 | 0.8 | 1.37 | 21(19–23) | 328(327–330) | CCR5 | Pneumonia |
2669 i02m | 2 | 30 | 29 | 1.1 | 0.6 | 0.61 | 25(23–25) | 339(335–339) | CCR5 |  |
2669 i06m | 6 | 33 | 33 | 1.3 | 0.7 | 0.66 | 25(23–26) | 337(329–339) | CCR5 | Bronchitis |
2873 i02m | 2 | 29 | 26 | 1.2 | 0.6 | 0.91 | 28(27–29) | 356(356-356) | CCR5 |  |
2873 i04m | 4 | 29 | 27 | 1.0 | 0.5 | 0.77 | 28(27–28) | 356(356-356) | CCR5 | Tuberculosis |
2617 i02m | 2 | 27 | 27 | 1.1 | 0.6 | 0.52 | 23(22–24) | 336(336-336) |  |  |
2617 i04m | 4 | 23 | 23 | 1.3 | 0.8 | 0.41 | 23(22–24) | 336(336-336) |  |  |
2617 i06m | 6 | 26 | 26 | 1.8 | 1.0 | 0.69 | 24(23–24) | 336(336-336) | CCR5 | Pyrexia |
1984 i04m | 4 | 25 | 25 | 2.1 | 1.0 | 0.97 | 21(19–22) | 343(343-343) |  |  |
1984 i06m | 6 | 27 | 26 | 1.7 | 0.7 | 1.21 | 22(20–24) | 342(332–343) | CCR5 |  |
1984 i12m | 12 | 27 | 27 | 2.8 | 1.3 | 0.94 | 23(21–24) | 340(331–343) | CCR5 |  |
1984 i24m | 24 | 26 | 26 | 4.2 | 2.0 | 0.98 | 24(22–26) | 329(325–340) | CCR5 |  |
1984 i36m | 36 | 29 | 27 | 5.4 | 2.6 | 1.04 | 24(22–26) | 332(326–341) | CCR5 |  |
1984 i48m | 48 | 26 | 26 | 6.6 | 3.3 | 1.02 | 24(22–26) | 331(323–344) | CCR5 |  |
1084 i06m | 6 | 25 | 25 | 2.4 | 1.2 | 0.68 | 21(19–23) | 319(319–328) |  |  |
1084 i27m | 27 | 28 | 28 | 1.3 | 0.7 | 0.65 | 25(24–25) | 328(328-328) | CCR5 |  |
1084 i36m | 36 | 25 | 24 | 5 | 2.6 | 1.1 | 25(22–28) | 336(325–344) | CCR5 |  |
1084 i48m | 48 | 48 | 40 | 8.9 | 4.9 | 0.76 | 27(18–28) | 344(325–344) | CCR5 |  |
1690 i12m | 12 | 28 | 28 | 1.8 | 1.0 | 0.71 | 26(23–27) | 338(331–339) | CCR5 |  |
1690 i24m | 24 | 31 | 31 | 2.1 | 1.1 | 0.65 | 23(22–25) | 329(325–336) |  |  |
1690 i36m | 36 | 30 | 30 | 3.0 | 1.7 | 0.72 | 23(19–25) | 327(319–338) |  |  |
1690 i48m | 48 | 26 | 26 | 4.4 | 2.2 | 1.01 | 24(23–26) | 336(331–341) | CXCR4/CCR5 |  |