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Table 1 Thermodynamic parameters of isothermal titration calorimetry measurements

From: Structural basis for the inhibition of HIV-1 Nef by a high-affinity binding single-domain antibody

Titration schemea

K d

ΔG

ΔH

ΔS

T ΔS

n

(nM)

(kcal/mol)

(kcal/mol)

(kcal/mol/deg)

(kcal/mol)

([..]/ [..])

a.) SH3 B6 –Nef–sdAb19 complex formation

SH3B6 to NefSF2b

18.7

−10.55

−22.51 (±0.25)

−0.040

−11.96

0.81 (±0.005)

sdAb19 to NefSF2

38.6

−10.11

−11.62 (±0.005)

−0.005

−1.51

0.81 (±0.002)

b.) sdAb19 binding to Nef

sdAb19 to myrNefSF2

32.7

−10.20

−14.97 (±0.22)

−0.016

−4.77

0.81 (±0.006)

sdAb19 to NefNL4–3

18.5

−10.37

−17.97 (±0.30)

−0.025

−7.42

0.88 (±0.007)

sdAb19 to NefNA7

118

−9.45

−12.82 (±0.12)

−0.011

−3.34

0.74 (±0.004)

sdAb19 to NefSF2 (∆ flex. loop)

98

−9.55

−10.71 (±0.06)

−0.004

−1.16

0.87 (±0.003)

c.) sdAb19 mutant binding

sdAb19 (G102R,S103E) to NefSF2

920

−8.25

−9.93 (±0.56)

−0.006

−1.68

0.9 (±0.085)

sdAb19 (D60R) to NefSF2

3700

−7.40

−3.38 (±0.56)

0.014

4.02

0.74 (±0.009)

sdAb19 (triple) to NefSF2

d.) Nef SF2 mutant binding

      

sdAb19 to NefSF2 (K148E)

1700

−7.86

−8.77 (±0.26)

−0.003

−0.89

0.74 (±0.015)

sdAb19 to NefSF2 (M198K)

sdAb19 to NefSF2 (L202K)

e.) Neffin binding to Nef

      

Neffin to NefSF2

1.6

−12.02

−38.26 (±0.17)

−0.088

−26.23

0.66 (±0.001)

Neffin to NefNL4–3

3.9

−11.49

−33.19 (±0.20)

−0.073

−21.71

0.65 (±0.002)

Neffin to NefNA7

14.4

−10.72

−34.69 (±0.12)

−0.080

−23.97

0.67 (±0.001)

Neffin (triple) to NefSF2

23.3

−10.41

−18.13 (±0.12)

−0.026

−7.72

1.08 (±0.004)

  1. aall ITC measurements were performed at 25°C.
  2. bRecombinant Nef proteins refer to: NefSF2 (45–210, C59S, C210A); myrNefSF2 (myr2-210, C59S, C210A); NefNL4–3 (41–206, C206A); NefNA7 (41–206, C206A).