Table 1 HIV-1 DNA integration sites and host-virus junction sequence
From: DNA damage enhances integration of HIV-1 into macrophages by overcoming integrase inhibition
Seq ID | Inhibitor | Chr | Locus | Strand | RefSeq gene | Insertion | Deletion |
|---|---|---|---|---|---|---|---|
100902 | DMSO | 20 | 33371451 | plus | NCOA6 | - | - |
100903 | DMSO | 17 | 35993714 | minus | DDX52 | - | - |
100904 | DMSO | 3 | 156651874 | minus | LEKR1 | - | - |
100906 | DMSO | 20 | 60900963 | minus | LAMA5 | - | - |
100907 | DMSO | 3 | 19680267 | minus | DLG1 | - | - |
100910 | DMSO | 4 | 150767744 | plus | - | - | - |
100912 | DMSO | 9 | 131400460 | plus | WDR34 | - | - |
100914 | DMSO | 1 | 156020423 | minus | UBQLN4 | 11bp (ACAGCAGTTAG) | 37 bp |
100916 | DMSO | 17 | 43551920 | minus | PLEKHM1 | - | - |
100919 | DMSO | 20 | 2467413 | minus | ZNF343 | - | - |
100921 | DMSO | 10 | 114725221 | minus | TCF7L2 | - | - |
106501 | DMSO | 4 | 87017147 | plus | MAPK10 | - | - |
106502 | DMSO | 2 | 98458616 | minus | TMEM131 | - | - |
106505 | DMSO | 15 | 44399565 | minus | FRMD10 | - | - |
106506 | DMSO | 2 | 197544261 | plus | CCDC150 | - | - |
106510 | DMSO | 7 | 333212296 | minus | BBS9 | - | - |
106513 | DMSO | 2 | 230499770 | plus | DNER | - | - |
106520 | DMSO | 17 | 38682989 | plus | CR597260 | - | - |
106521 | DMSO | 19 | 17213409 | minus | MY09B | - | - |
106524 | DMSO | 6 | 33219360 | plus | VPS52 | - | - |
100925 | RAL | 9 | 33033919 | plus | DNAJA1 | - | 9 bp |
100931 | RAL | 14 | 44024820 | minus | - | - | 20 bp |
100937 | RAL | 2 | 102387409 | plus | MAP4K4 | 9 bp (GACACTTAG0 | - |
100940 | RAL | 5 | 176735496 | plus | MXD3 | 2 bp (AC) | - |
100944 | RAL | 3 | 105267040 | plus | - | 21 bp (AATAAAAAGGTACAAATAGAC) | - |
106525 | RAL | 14 | 87606685 | minus | - | 6 bp (TCATAA) | 3 bp |
106530 | RAL | 22 | 36006496 | plus | MB | 1 bp (A) | 9 bp |
106534 | RAL | 7 | 130544996 | minus | CR618431 | 10 bp (TTGTAATTAC) | - |
106537 | RAL | 1 | 63779999 | minus | BC040309 | 16 bp (AAAGAAAAGGGGGGAC) | - |
106538 | RAL | 3 | 190624485 | minus | - | - | 4 bp |
106540 | RAL | 3 | 85084717 | minus | CADM2 | - | - |
106542 | RAL | 18 | 40381428 | minus | RIT2 | 2 bp (CA) | 1 bp |
106558 | RAL | 6 | 52427867 | minus | TRAM2 | - | - |
106574 | RAL | 9 | 18460635 | plus | - | 9 bp (ACACCTAAT) | - |
106582 | RAL | 1 | 6482403 | minus | HES2 | 4 bp (GGAC) | - |
106588 | RAL | 11 | 28954901 | plus | - | 4 bp (GGAC) | - |
106596 | RAL | 7 | 92394729 | plus | CDK6 | 4 bp (GGAC) | - |